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Bio::Blast::Record::Blast Class Reference

Inheritance diagram for Bio::Blast::Record::Blast:

Bio::Blast::Record::Header Bio::Blast::Record::DatabaseReport Bio::Blast::Record::Parameters

List of all members.


Detailed Description

Saves the results from a blast search.

Members:
descriptions        A list of Description objects.
alignments          A list of Alignment objects.
multiple_alignment  A MultipleAlignment object.
+ members inherited from base classes

Definition at line 296 of file Record.py.


Public Member Functions

def __init__

Public Attributes

 alignments
 application
 blast_cutoff
 database
 database_length
 database_letters
 database_name
 database_sequences
 date
 descriptions
 dropoff_1st_pass
 effective_database_length
 effective_hsp_length
 effective_query_length
 effective_search_space
 effective_search_space_used
 frameshift
 gap_penalties
 gap_trigger
 gap_x_dropoff
 gap_x_dropoff_final
 gapped
 hsps_gapped
 hsps_no_gap
 hsps_prelim_gapped
 hsps_prelim_gapped_attemped
 ka_params
 ka_params_gap
 matrix
 multiple_alignment
 num_good_extends
 num_hits
 num_letters_in_database
 num_seqs_better_e
 num_sequences
 num_sequences_in_database
 posted_date
 query
 query_length
 query_letters
 reference
 sc_match
 sc_mismatch
 threshold
 version
 window_size

The documentation for this class was generated from the following file:

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