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Bio::Clustalw::MultipleAlignCL Class Reference

List of all members.

Detailed Description

Represent a clustalw multiple alignment command line.

This is meant to make it easy to code the command line options you
want to submit to clustalw.

Clustalw has a ton of options and things to do but this is set up to
represent a clustalw mutliple alignment.

Warning: I don't use all of these options personally, so if you find
one to be broken for any reason, please let us know!

Definition at line 296 of file __init__.py.

Public Member Functions

def __init__
def __str__
def set_dna_matrix
def set_guide_tree
def set_new_guide_tree
def set_output
def set_protein_matrix
def set_type

Public Attributes


Static Public Attributes

list OUTPUT_SEQNOS = ['OFF', 'ON']

The documentation for this class was generated from the following file:

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