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Sourcecode: python-biopython version File versions

Bio::SubsMat::SeqMat Class Reference

List of all members.


Detailed Description

A Generic sequence matrix class
The key is a 2-tuple containing the letter indices of the matrix. Those
should be sorted in the tuple (low, high). Because each matrix is dealt
with as a half-matrix.

Definition at line 129 of file __init__.py.


Public Member Functions

def __init__
def __mul__
def __sub__
def __sum__
def all_letters_sum
def letter_sum
def make_entropy
def make_relative_entropy
def print_full_mat
def print_mat

Public Attributes

 ab_list
 alphabet
 entropy
 mat_name
 mat_type
 relative_entropy
 sum_letters

Private Member Functions

def _alphabet_from_matrix
def _correct_matrix
def _full_to_half
def _init_zero

The documentation for this class was generated from the following file:

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