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Bio::Medline::nlmmedline_010319_format Namespace Reference


Detailed Description

A Martel format to parse the NLM's XML format for Medline.

http://www.nlm.nih.gov/databases/dtd/nlmmedline_010319.dtd
http://www.nlm.nih.gov/databases/dtd/nlmmedlinecitation_010319.dtd
http://www.nlm.nih.gov/databases/dtd/nlmcommon_010319.dtd

Formats:
citation_format    Format for one MedlineCitation.
format             Format for a whole file.


Functions

def _end_elem
def _start_elem
def group_elem
def simple_elem

Variables

tuple author_name = Alt(personal_name, CollectiveName)
 citation_format = MedlineCitation
tuple DeleteCitation_end = Rep(space)
tuple DeleteCitation_start = Rep(space)
tuple DOCTYPE = Str("<!DOCTYPE")
list elements
tuple footer_format = Opt(DeleteCitation)
tuple format
tuple header_format = Group("header", DOCTYPE + MedlineCitationSet_start)
tuple MedlineCitationSet_end = Str("</MedlineCitationSet>")
 normal_date = Year+Month+Day+\
 personal_name = LastName+\
tuple pub_date = Alt((Year + Opt(Alt((Month + Opt(Day)), Season))), MedlineDate)
tuple Ref_template = RefSource+Opt(MedlineID)
list self = sys.modules[__name__]
tuple space = Any(" \t")


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