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Sourcecode: python-biopython version File versions

trie.h

typedef struct _Trie *Trie;



/* Trie_new
 * --------
 * Create a new trie.  Return a Trie structure, which is an abstract
 * data structure.  The client should not have to know about the
 * details of this structure.  When finished, each Trie should be
 * freed with Trie_del.
 */
Trie Trie_new();


/* Trie_del
 * --------
 * Free a Trie data structure.
 */
void Trie_del(Trie trie);


/* Trie_set
 * --------
 * Set a string in the Trie to some value.  Returns a 0 if the
 * function succeeded.
 */
int Trie_set(Trie trie, const unsigned char *key, const void *value);

/* Trie_get
 * --------
 * Lookup whether a key exists in the Trie.  Returns the value that
 * was previous set in the Trie, or NULL if it doesn't exist.
 */
void *Trie_get(const Trie trie, const unsigned char *key);


/* Trie_get_approximate
 * --------------------
 * Lookup whether a key exists in the Trie, allowing for mismatches to
 * the dictionary.  Passes back values using a callback function.
 */
void 
Trie_get_approximate(const Trie trie, const unsigned char *key, const int k,
                 void (*callback)(const unsigned char *key, 
                              const void *value,
                              const int mismatches,
                              void *data),
                 void *data
                 );

/* Trie_len
 * --------
 * Return the number of strings in the trie.
 */
int Trie_len(const Trie trie);


/* Trie_has_key
 * ------------
 * Return whether a key exists in the trie.
 */
int Trie_has_key(const Trie trie, const unsigned char *key);


/* Trie_has_prefix
 * ---------------
 * Return whether a string is a prefix of a key in the trie.
 */
int Trie_has_prefix(const Trie trie, const unsigned char *prefix);


/* Trie_with_prefix
 * ----------------
 * Iterate over all the keys in the trie that start with a prefix.
 */
void Trie_with_prefix(const Trie trie, const unsigned char *prefix,
                  void (*callback)(const unsigned char *key, 
                               const void *value,
                               void *data),
                  void *data
                  );


/* Trie_iterate
 * ------------
 * Iterate through everything stored in the trie.  callback is a
 * function that gets called for each thing in the trie.  It is called
 * in arbitrary order.  data is a pointer to some arbitrary data and
 * gets passed unchanged to the callback.
 */
void Trie_iterate(const Trie trie, 
              void (*callback)(const unsigned char *key, 
                           const void *value,
                           void *data),
              void *data
              );

/* Trie_serialize
 * --------------
 * Serialize a tree into a stream of bytes.  This function takes a
 * callback 'write' that should take a pointer to data and the length
 * of the data in bytes.  This will be called repeatedly until the
 * whole Trie is serialized.  When it is done, this function will call
 * 'write' with a length of 0.  Since the values are handled by the
 * client, this function also takes a callback function 'write_value'
 * so that the client can serialize their own values.
 *
 * This function is platform-dependent, so byte streams created on one
 * machine may not necessarily port to another.
 */
int Trie_serialize(const Trie trie, 
               int (*write)(const void *towrite, const int length, 
                        void *data),
               int (*write_value)(const void *value, void *data),
               void *data);



/* Trie_deserialize
 * ----------------
 * Deserialize a tree that was previously serialized with
 * Trie_serialize.  This function takes a callback 'read' that should
 * read 'length' bytes and save it to 'wasread'.  'read_value' should
 * read a value and return a pointer to it.  'data' is a pointer that
 * will be passed unchanged to 'read' and 'read_value'.
 */
Trie Trie_deserialize(int (*read)(void *wasread, const int length, void *data),
                  void *(*read_value)(void *data),
                  void *data);

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