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Sourcecode: python-biopython version File versions

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Here is a list of all documented files with brief descriptions:
python-biopython-1.43/setup.py [code]
python-biopython-1.43/Bio/__init__.py [code]
python-biopython-1.43/Bio/biblio.py [code]
python-biopython-1.43/Bio/cdistancemodule.c [code]
python-biopython-1.43/Bio/clistfnsmodule.c [code]
python-biopython-1.43/Bio/cMarkovModelmodule.c [code]
python-biopython-1.43/Bio/cmathfnsmodule.c [code]
python-biopython-1.43/Bio/cpairwise2module.c [code]
python-biopython-1.43/Bio/crc.py [code]
python-biopython-1.43/Bio/cstringfnsmodule.c [code]
python-biopython-1.43/Bio/csupport.c [code]
python-biopython-1.43/Bio/csupport.h [code]
python-biopython-1.43/Bio/DBXRef.py [code]
python-biopython-1.43/Bio/Decode.py [code]
python-biopython-1.43/Bio/distance.py [code]
python-biopython-1.43/Bio/DocSQL.py [code]
python-biopython-1.43/Bio/EZRetrieve.py [code]
python-biopython-1.43/Bio/File.py [code]
python-biopython-1.43/Bio/FilteredReader.py [code]
python-biopython-1.43/Bio/FormatIO.py [code]
python-biopython-1.43/Bio/HotRand.py [code]
python-biopython-1.43/Bio/Index.py [code]
python-biopython-1.43/Bio/kNN.py [code]
python-biopython-1.43/Bio/lcc.py [code]
python-biopython-1.43/Bio/listfns.py [code]
python-biopython-1.43/Bio/LogisticRegression.py [code]
python-biopython-1.43/Bio/MarkovModel.py [code]
python-biopython-1.43/Bio/MarkupEditor.py [code]
python-biopython-1.43/Bio/mathfns.py [code]
python-biopython-1.43/Bio/MaxEntropy.py [code]
python-biopython-1.43/Bio/NaiveBayes.py [code]
python-biopython-1.43/Bio/NetCatch.py [code]
python-biopython-1.43/Bio/pairwise2.py [code]
python-biopython-1.43/Bio/ParserSupport.py [code]
python-biopython-1.43/Bio/PropertyManager.py [code]
python-biopython-1.43/Bio/PubMed.py [code]
python-biopython-1.43/Bio/Search.py [code]
python-biopython-1.43/Bio/Seq.py [code]
python-biopython-1.43/Bio/SeqFeature.py [code]
python-biopython-1.43/Bio/SeqRecord.py [code]
python-biopython-1.43/Bio/SGMLExtractor.py [code]
python-biopython-1.43/Bio/Std.py [code]
python-biopython-1.43/Bio/StdHandler.py [code]
python-biopython-1.43/Bio/stringfns.py [code]
python-biopython-1.43/Bio/Transcribe.py [code]
python-biopython-1.43/Bio/Translate.py [code]
python-biopython-1.43/Bio/trie.c [code]
python-biopython-1.43/Bio/trie.h [code]
python-biopython-1.43/Bio/triefind.py [code]
python-biopython-1.43/Bio/triemodule.c [code]
python-biopython-1.43/Bio/utils.py [code]
python-biopython-1.43/Bio/Writer.py [code]
python-biopython-1.43/Bio/Affy/__init__.py [code]
python-biopython-1.43/Bio/Affy/CelFile.py [code]
python-biopython-1.43/Bio/Affy/celmodule.cc [code]
python-biopython-1.43/Bio/Ais/__init__.py [code]
python-biopython-1.43/Bio/Align/__init__.py [code]
python-biopython-1.43/Bio/Align/AlignInfo.py [code]
python-biopython-1.43/Bio/Align/FormatConvert.py [code]
python-biopython-1.43/Bio/Align/Generic.py [code]
python-biopython-1.43/Bio/AlignAce/__init__.py [code]
python-biopython-1.43/Bio/AlignAce/AlignAceStandalone.py [code]
python-biopython-1.43/Bio/AlignAce/Applications.py [code]
python-biopython-1.43/Bio/AlignAce/CompareAceStandalone.py [code]
python-biopython-1.43/Bio/AlignAce/Motif.py [code]
python-biopython-1.43/Bio/AlignAce/Parser.py [code]
python-biopython-1.43/Bio/AlignAce/Scanner.py [code]
python-biopython-1.43/Bio/Alphabet/__init__.py [code]
python-biopython-1.43/Bio/Alphabet/IUPAC.py [code]
python-biopython-1.43/Bio/Alphabet/Reduced.py [code]
python-biopython-1.43/Bio/Application/__init__.py [code]
python-biopython-1.43/Bio/Blast/__init__.py [code]
python-biopython-1.43/Bio/Blast/Applications.py [code]
python-biopython-1.43/Bio/Blast/NCBIStandalone.py [code]
python-biopython-1.43/Bio/Blast/NCBIWWW.py [code]
python-biopython-1.43/Bio/Blast/NCBIXML.py [code]
python-biopython-1.43/Bio/Blast/ParseBlastTable.py [code]
python-biopython-1.43/Bio/Blast/Record.py [code]
python-biopython-1.43/Bio/builders/__init__.py [code]
python-biopython-1.43/Bio/builders/Search/__init__.py [code]
python-biopython-1.43/Bio/builders/Search/search.py [code]
python-biopython-1.43/Bio/builders/SeqRecord/__init__.py [code]
python-biopython-1.43/Bio/builders/SeqRecord/sequence.py [code]
python-biopython-1.43/Bio/CAPS/__init__.py [code]
python-biopython-1.43/Bio/CDD/__init__.py [code]
python-biopython-1.43/Bio/CDD/cdd_format.py [code]
python-biopython-1.43/Bio/CDD/Record.py [code]
python-biopython-1.43/Bio/Clustalw/__init__.py [code]
python-biopython-1.43/Bio/Clustalw/clustal_format.py [code]
python-biopython-1.43/Bio/Cluster/__init__.py [code]
python-biopython-1.43/Bio/Cluster/cluster.c [code]
python-biopython-1.43/Bio/Cluster/cluster.h [code]
python-biopython-1.43/Bio/Cluster/clustermodule.c [code]
python-biopython-1.43/Bio/Compass/__init__.py [code]
python-biopython-1.43/Bio/config/__init__.py [code]
python-biopython-1.43/Bio/config/_stanzaformat.py [code]
python-biopython-1.43/Bio/config/_support.py [code]
python-biopython-1.43/Bio/config/DBRegistry.py [code]
python-biopython-1.43/Bio/config/FormatRegistry.py [code]
python-biopython-1.43/Bio/config/Registry.py [code]
python-biopython-1.43/Bio/config/SeqDBRegistry.py [code]
python-biopython-1.43/Bio/Crystal/__init__.py [code]
python-biopython-1.43/Bio/Data/__init__.py [code]
python-biopython-1.43/Bio/Data/CodonTable.py [code]
python-biopython-1.43/Bio/Data/IUPACData.py [code]
python-biopython-1.43/Bio/dbdefs/__init__.py [code]
python-biopython-1.43/Bio/dbdefs/_support.py [code]
python-biopython-1.43/Bio/dbdefs/embl.py [code]
python-biopython-1.43/Bio/dbdefs/fasta.py [code]
python-biopython-1.43/Bio/dbdefs/genbank.py [code]
python-biopython-1.43/Bio/dbdefs/interpro.py [code]
python-biopython-1.43/Bio/dbdefs/medline.py [code]
python-biopython-1.43/Bio/dbdefs/pdb.py [code]
python-biopython-1.43/Bio/dbdefs/prodoc.py [code]
python-biopython-1.43/Bio/dbdefs/prosite.py [code]
python-biopython-1.43/Bio/dbdefs/swissprot.py [code]
python-biopython-1.43/Bio/ECell/__init__.py [code]
python-biopython-1.43/Bio/ECell/ecell_format.py [code]
python-biopython-1.43/Bio/ECell/Record.py [code]
python-biopython-1.43/Bio/Emboss/__init__.py [code]
python-biopython-1.43/Bio/Emboss/Applications.py [code]
python-biopython-1.43/Bio/Emboss/Primer.py [code]
python-biopython-1.43/Bio/Emboss/primer3_format.py [code]
python-biopython-1.43/Bio/Emboss/primersearch_format.py [code]
python-biopython-1.43/Bio/Encodings/__init__.py [code]
python-biopython-1.43/Bio/Encodings/IUPACEncoding.py [code]
python-biopython-1.43/Bio/Enzyme/__init__.py [code]
python-biopython-1.43/Bio/EUtils/__init__.py [code]
python-biopython-1.43/Bio/EUtils/Config.py [code]
python-biopython-1.43/Bio/EUtils/Datatypes.py [code]
python-biopython-1.43/Bio/EUtils/DBIdsClient.py [code]
python-biopython-1.43/Bio/EUtils/dtd2py.py [code]
python-biopython-1.43/Bio/EUtils/HistoryClient.py [code]
python-biopython-1.43/Bio/EUtils/Mixins.py [code]
python-biopython-1.43/Bio/EUtils/MultiDict.py [code]
python-biopython-1.43/Bio/EUtils/parse.py [code]
python-biopython-1.43/Bio/EUtils/POM.py [code]
python-biopython-1.43/Bio/EUtils/ReseekFile.py [code]
python-biopython-1.43/Bio/EUtils/setup.py [code]
python-biopython-1.43/Bio/EUtils/sourcegen.py [code]
python-biopython-1.43/Bio/EUtils/ThinClient.py [code]
python-biopython-1.43/Bio/EUtils/DTDs/__init__.py [code]
python-biopython-1.43/Bio/EUtils/DTDs/eInfo_020511.py [code]
python-biopython-1.43/Bio/EUtils/DTDs/eLink_020511.py [code]
python-biopython-1.43/Bio/EUtils/DTDs/ePost_020511.py [code]
python-biopython-1.43/Bio/EUtils/DTDs/eSearch_020511.py [code]
python-biopython-1.43/Bio/EUtils/DTDs/eSummary_020511.py [code]
python-biopython-1.43/Bio/EUtils/DTDs/LinkOut.py [code]
python-biopython-1.43/Bio/expressions/__init__.py [code]
python-biopython-1.43/Bio/expressions/blocks.py [code]
python-biopython-1.43/Bio/expressions/fasta.py [code]
python-biopython-1.43/Bio/expressions/genbank.py [code]
python-biopython-1.43/Bio/expressions/hmmpfam.py [code]
python-biopython-1.43/Bio/expressions/transfac.py [code]
python-biopython-1.43/Bio/expressions/blast/__init__.py [code]
python-biopython-1.43/Bio/expressions/blast/ncbiblast.py [code]
python-biopython-1.43/Bio/expressions/blast/wublast.py [code]
python-biopython-1.43/Bio/expressions/embl/__init__.py [code]
python-biopython-1.43/Bio/expressions/embl/embl65.py [code]
python-biopython-1.43/Bio/expressions/swissprot/__init__.py [code]
python-biopython-1.43/Bio/expressions/swissprot/ipi.py [code]
python-biopython-1.43/Bio/expressions/swissprot/speclist.py [code]
python-biopython-1.43/Bio/expressions/swissprot/sprot38.py [code]
python-biopython-1.43/Bio/expressions/swissprot/sprot40.py [code]
python-biopython-1.43/Bio/Fasta/__init__.py [code]
python-biopython-1.43/Bio/Fasta/FastaAlign.py [code]
python-biopython-1.43/Bio/formatdefs/__init__.py [code]
python-biopython-1.43/Bio/formatdefs/embl.py [code]
python-biopython-1.43/Bio/formatdefs/genbank.py [code]
python-biopython-1.43/Bio/formatdefs/search.py [code]
python-biopython-1.43/Bio/formatdefs/sequence.py [code]
python-biopython-1.43/Bio/formatdefs/swissprot.py [code]
python-biopython-1.43/Bio/FSSP/__init__.py [code]
python-biopython-1.43/Bio/FSSP/fssp_rec.py [code]
python-biopython-1.43/Bio/FSSP/FSSPTools.py [code]
python-biopython-1.43/Bio/GA/__init__.py [code]
python-biopython-1.43/Bio/GA/Evolver.py [code]
python-biopython-1.43/Bio/GA/Organism.py [code]
python-biopython-1.43/Bio/GA/Crossover/__init__.py [code]
python-biopython-1.43/Bio/GA/Crossover/General.py [code]
python-biopython-1.43/Bio/GA/Crossover/GeneralPoint.py [code]
python-biopython-1.43/Bio/GA/Crossover/Point.py [code]
python-biopython-1.43/Bio/GA/Crossover/TwoPoint.py [code]
python-biopython-1.43/Bio/GA/Crossover/Uniform.py [code]
python-biopython-1.43/Bio/GA/Mutation/__init__.py [code]
python-biopython-1.43/Bio/GA/Mutation/General.py [code]
python-biopython-1.43/Bio/GA/Mutation/Simple.py [code]
python-biopython-1.43/Bio/GA/Repair/__init__.py [code]
python-biopython-1.43/Bio/GA/Repair/Stabilizing.py [code]
python-biopython-1.43/Bio/GA/Selection/__init__.py [code]
python-biopython-1.43/Bio/GA/Selection/Abstract.py [code]
python-biopython-1.43/Bio/GA/Selection/Diversity.py [code]
python-biopython-1.43/Bio/GA/Selection/RouletteWheel.py [code]
python-biopython-1.43/Bio/GA/Selection/Tournament.py [code]
python-biopython-1.43/Bio/GenBank/__init__.py [code]
python-biopython-1.43/Bio/GenBank/LocationParser.py [code]
python-biopython-1.43/Bio/GenBank/Record.py [code]
python-biopython-1.43/Bio/GenBank/Scanner.py [code]
python-biopython-1.43/Bio/GenBank/utils.py [code]
python-biopython-1.43/Bio/Geo/__init__.py [code]
python-biopython-1.43/Bio/Geo/geo_format.py [code]
python-biopython-1.43/Bio/Geo/Record.py [code]
python-biopython-1.43/Bio/GFF/__init__.py [code]
python-biopython-1.43/Bio/GFF/binning.py [code]
python-biopython-1.43/Bio/GFF/easy.py [code]
python-biopython-1.43/Bio/GFF/GenericTools.py [code]
python-biopython-1.43/Bio/Gobase/__init__.py [code]
python-biopython-1.43/Bio/Graphics/__init__.py [code]
python-biopython-1.43/Bio/Graphics/BasicChromosome.py [code]
python-biopython-1.43/Bio/Graphics/Comparative.py [code]
python-biopython-1.43/Bio/Graphics/DisplayRepresentation.py [code]
python-biopython-1.43/Bio/Graphics/Distribution.py [code]
python-biopython-1.43/Bio/HMM/__init__.py [code]
python-biopython-1.43/Bio/HMM/DynamicProgramming.py [code]
python-biopython-1.43/Bio/HMM/MarkovModel.py [code]
python-biopython-1.43/Bio/HMM/Trainer.py [code]
python-biopython-1.43/Bio/HMM/Utilities.py [code]
python-biopython-1.43/Bio/IntelliGenetics/__init__.py [code]
python-biopython-1.43/Bio/IntelliGenetics/intelligenetics_format.py [code]
python-biopython-1.43/Bio/IntelliGenetics/Record.py [code]
python-biopython-1.43/Bio/InterPro/__init__.py [code]
python-biopython-1.43/Bio/Kabat/__init__.py [code]
python-biopython-1.43/Bio/Kabat/kabat_format.py [code]
python-biopython-1.43/Bio/Kabat/Record.py [code]
python-biopython-1.43/Bio/KDTree/__init__.py [code]
python-biopython-1.43/Bio/KDTree/CKDTree.py [code]
python-biopython-1.43/Bio/KDTree/KDTree.cpp [code]
python-biopython-1.43/Bio/KDTree/KDTree.h [code]
python-biopython-1.43/Bio/KDTree/KDTree.py [code]
python-biopython-1.43/Bio/KDTree/KDTree.swig.cpp [code]
python-biopython-1.43/Bio/KEGG/__init__.py [code]
python-biopython-1.43/Bio/KEGG/Compound/__init__.py [code]
python-biopython-1.43/Bio/KEGG/Compound/compound_format.py [code]
python-biopython-1.43/Bio/KEGG/Enzyme/__init__.py [code]
python-biopython-1.43/Bio/KEGG/Enzyme/enzyme_format.py [code]
python-biopython-1.43/Bio/KEGG/Map/__init__.py [code]
python-biopython-1.43/Bio/KEGG/Map/map_format.py [code]
python-biopython-1.43/Bio/LocusLink/__init__.py [code]
python-biopython-1.43/Bio/LocusLink/locus_format.py [code]
python-biopython-1.43/Bio/LocusLink/web_parse.py [code]
python-biopython-1.43/Bio/Medline/__init__.py [code]
python-biopython-1.43/Bio/Medline/nlmmedline_001211_format.py [code]
python-biopython-1.43/Bio/Medline/nlmmedline_010319_format.py [code]
python-biopython-1.43/Bio/Medline/nlmmedline_011101_format.py [code]
python-biopython-1.43/Bio/Medline/nlmmedline_031101_format.py [code]
python-biopython-1.43/Bio/Medline/NLMMedlineXML.py [code]
python-biopython-1.43/Bio/MEME/__init__.py [code]
python-biopython-1.43/Bio/MEME/Motif.py [code]
python-biopython-1.43/Bio/MEME/Parser.py [code]
python-biopython-1.43/Bio/MetaTool/__init__.py [code]
python-biopython-1.43/Bio/MetaTool/Input.py [code]
python-biopython-1.43/Bio/MetaTool/metatool_format.py [code]
python-biopython-1.43/Bio/MetaTool/Record.py [code]
python-biopython-1.43/Bio/Mindy/__init__.py [code]
python-biopython-1.43/Bio/Mindy/BaseDB.py [code]
python-biopython-1.43/Bio/Mindy/BerkeleyDB.py [code]
python-biopython-1.43/Bio/Mindy/compression.py [code]
python-biopython-1.43/Bio/Mindy/FlatDB.py [code]
python-biopython-1.43/Bio/Mindy/Location.py [code]
python-biopython-1.43/Bio/Mindy/SimpleSeqRecord.py [code]
python-biopython-1.43/Bio/Mindy/XPath.py [code]
python-biopython-1.43/Bio/MultiProc/__init__.py [code]
python-biopython-1.43/Bio/MultiProc/copen.py [code]
python-biopython-1.43/Bio/MultiProc/Scheduler.py [code]
python-biopython-1.43/Bio/MultiProc/Task.py [code]
python-biopython-1.43/Bio/NBRF/__init__.py [code]
python-biopython-1.43/Bio/NBRF/nbrf_format.py [code]
python-biopython-1.43/Bio/NBRF/Record.py [code]
python-biopython-1.43/Bio/NBRF/ValSeq.py [code]
python-biopython-1.43/Bio/Ndb/__init__.py [code]
python-biopython-1.43/Bio/NeuralNetwork/__init__.py [code]
python-biopython-1.43/Bio/NeuralNetwork/StopTraining.py [code]
python-biopython-1.43/Bio/NeuralNetwork/Training.py [code]
python-biopython-1.43/Bio/NeuralNetwork/BackPropagation/__init__.py [code]
python-biopython-1.43/Bio/NeuralNetwork/BackPropagation/Layer.py [code]
python-biopython-1.43/Bio/NeuralNetwork/BackPropagation/Network.py [code]
python-biopython-1.43/Bio/NeuralNetwork/Gene/__init__.py [code]
python-biopython-1.43/Bio/NeuralNetwork/Gene/Motif.py [code]
python-biopython-1.43/Bio/NeuralNetwork/Gene/Pattern.py [code]
python-biopython-1.43/Bio/NeuralNetwork/Gene/Schema.py [code]
python-biopython-1.43/Bio/NeuralNetwork/Gene/Signature.py [code]
python-biopython-1.43/Bio/Nexus/__init__.py [code]
python-biopython-1.43/Bio/Nexus/cnexus.c [code]
python-biopython-1.43/Bio/Nexus/Nexus.py [code]
python-biopython-1.43/Bio/Nexus/Nodes.py [code]
python-biopython-1.43/Bio/Nexus/Trees.py [code]
python-biopython-1.43/Bio/NMR/__init__.py [code]
python-biopython-1.43/Bio/NMR/NOEtools.py [code]
python-biopython-1.43/Bio/NMR/xpktools.py [code]
python-biopython-1.43/Bio/Parsers/__init__.py [code]
python-biopython-1.43/Bio/Parsers/spark.py [code]
python-biopython-1.43/Bio/Pathway/__init__.py [code]
python-biopython-1.43/Bio/Pathway/Rep/__init__.py [code]
python-biopython-1.43/Bio/Pathway/Rep/Graph.py [code]
python-biopython-1.43/Bio/Pathway/Rep/HashSet.py [code]
python-biopython-1.43/Bio/Pathway/Rep/MultiGraph.py [code]
python-biopython-1.43/Bio/PDB/__init__.py [code]
python-biopython-1.43/Bio/PDB/AbstractPropertyMap.py [code]
python-biopython-1.43/Bio/PDB/Atom.py [code]
python-biopython-1.43/Bio/PDB/Chain.py [code]
python-biopython-1.43/Bio/PDB/Dice.py [code]
python-biopython-1.43/Bio/PDB/DSSP.py [code]
python-biopython-1.43/Bio/PDB/Entity.py [code]
python-biopython-1.43/Bio/PDB/FragmentMapper.py [code]
python-biopython-1.43/Bio/PDB/HSExposure.py [code]
python-biopython-1.43/Bio/PDB/MMCIF2Dict.py [code]
python-biopython-1.43/Bio/PDB/MMCIFParser.py [code]
python-biopython-1.43/Bio/PDB/Model.py [code]
python-biopython-1.43/Bio/PDB/NACCESS.py [code]
python-biopython-1.43/Bio/PDB/NeighborSearch.py [code]
python-biopython-1.43/Bio/PDB/parse_pdb_header.py [code]
python-biopython-1.43/Bio/PDB/PDBExceptions.py [code]
python-biopython-1.43/Bio/PDB/PDBIO.py [code]
python-biopython-1.43/Bio/PDB/PDBList.py [code]
python-biopython-1.43/Bio/PDB/PDBParser.py [code]
python-biopython-1.43/Bio/PDB/Polypeptide.py [code]
python-biopython-1.43/Bio/PDB/PSEA.py [code]
python-biopython-1.43/Bio/PDB/Residue.py [code]
python-biopython-1.43/Bio/PDB/ResidueDepth.py [code]
python-biopython-1.43/Bio/PDB/Selection.py [code]
python-biopython-1.43/Bio/PDB/Structure.py [code]
python-biopython-1.43/Bio/PDB/StructureAlignment.py [code]
python-biopython-1.43/Bio/PDB/StructureBuilder.py [code]
python-biopython-1.43/Bio/PDB/Superimposer.py [code]
python-biopython-1.43/Bio/PDB/Vector.py [code]
python-biopython-1.43/Bio/PDB/mmCIF/lex.yy.c [code]
python-biopython-1.43/Bio/PDB/mmCIF/mmcif_test.c [code]
python-biopython-1.43/Bio/PDB/mmCIF/MMCIFlexmodule.c [code]
python-biopython-1.43/Bio/Prosite/__init__.py [code]
python-biopython-1.43/Bio/Prosite/Pattern.py [code]
python-biopython-1.43/Bio/Prosite/Prodoc.py [code]
python-biopython-1.43/Bio/Rebase/__init__.py [code]
python-biopython-1.43/Bio/Restriction/__init__.py [code]
python-biopython-1.43/Bio/Restriction/DNAUtils.c [code]
python-biopython-1.43/Bio/Restriction/PrintFormat.py [code]
python-biopython-1.43/Bio/Restriction/RanaConfig.py [code]
python-biopython-1.43/Bio/Restriction/Restriction.py [code]
python-biopython-1.43/Bio/Restriction/Restriction_Dictionary.py [code]
python-biopython-1.43/Bio/Restriction/_Update/__init__.py [code]
python-biopython-1.43/Bio/Restriction/_Update/RestrictionCompiler.py [code]
python-biopython-1.43/Bio/Restriction/_Update/Update.py [code]
python-biopython-1.43/Bio/Saf/__init__.py [code]
python-biopython-1.43/Bio/Saf/Record.py [code]
python-biopython-1.43/Bio/Saf/saf_format.py [code]
python-biopython-1.43/Bio/SCOP/__init__.py [code]
python-biopython-1.43/Bio/SCOP/Cla.py [code]
python-biopython-1.43/Bio/SCOP/Des.py [code]
python-biopython-1.43/Bio/SCOP/Dom.py [code]
python-biopython-1.43/Bio/SCOP/FileIndex.py [code]
python-biopython-1.43/Bio/SCOP/Hie.py [code]
python-biopython-1.43/Bio/SCOP/Raf.py [code]
python-biopython-1.43/Bio/SCOP/Residues.py [code]
python-biopython-1.43/Bio/SeqIO/__init__.py [code]
python-biopython-1.43/Bio/SeqIO/ClustalIO.py [code]
python-biopython-1.43/Bio/SeqIO/FASTA.py [code]
python-biopython-1.43/Bio/SeqIO/FastaIO.py [code]
python-biopython-1.43/Bio/SeqIO/generic.py [code]
python-biopython-1.43/Bio/SeqIO/InsdcIO.py [code]
python-biopython-1.43/Bio/SeqIO/Interfaces.py [code]
python-biopython-1.43/Bio/SeqIO/NexusIO.py [code]
python-biopython-1.43/Bio/SeqIO/PhylipIO.py [code]
python-biopython-1.43/Bio/SeqIO/StockholmIO.py [code]
python-biopython-1.43/Bio/SeqIO/SwissIO.py [code]
python-biopython-1.43/Bio/Sequencing/__init__.py [code]
python-biopython-1.43/Bio/Sequencing/Ace.py [code]
python-biopython-1.43/Bio/Sequencing/Phd.py [code]
python-biopython-1.43/Bio/SeqUtils/__init__.py [code]
python-biopython-1.43/Bio/SeqUtils/CodonUsage.py [code]
python-biopython-1.43/Bio/SeqUtils/CodonUsageIndices.py [code]
python-biopython-1.43/Bio/SeqUtils/IsoelectricPoint.py [code]
python-biopython-1.43/Bio/SeqUtils/MeltingTemp.py [code]
python-biopython-1.43/Bio/SeqUtils/ProtParam.py [code]
python-biopython-1.43/Bio/SeqUtils/ProtParamData.py [code]
python-biopython-1.43/Bio/Statistics/__init__.py [code]
python-biopython-1.43/Bio/Statistics/lowess.py [code]
python-biopython-1.43/Bio/SubsMat/__init__.py [code]
python-biopython-1.43/Bio/SubsMat/FreqTable.py [code]
python-biopython-1.43/Bio/SubsMat/MatrixInfo.py [code]
python-biopython-1.43/Bio/SVDSuperimposer/__init__.py [code]
python-biopython-1.43/Bio/SVDSuperimposer/SVDSuperimposer.py [code]
python-biopython-1.43/Bio/SwissProt/__init__.py [code]
python-biopython-1.43/Bio/SwissProt/KeyWList.py [code]
python-biopython-1.43/Bio/SwissProt/SProt.py [code]
python-biopython-1.43/Bio/UniGene/__init__.py [code]
python-biopython-1.43/Bio/Wise/__init__.py [code]
python-biopython-1.43/Bio/Wise/dnal.py [code]
python-biopython-1.43/Bio/Wise/psw.py [code]
python-biopython-1.43/Bio/writers/__init__.py [code]
python-biopython-1.43/Bio/writers/SeqRecord/__init__.py [code]
python-biopython-1.43/Bio/writers/SeqRecord/embl.py [code]
python-biopython-1.43/Bio/writers/SeqRecord/empty.py [code]
python-biopython-1.43/Bio/writers/SeqRecord/fasta.py [code]
python-biopython-1.43/Bio/WWW/__init__.py [code]
python-biopython-1.43/Bio/WWW/ExPASy.py [code]
python-biopython-1.43/Bio/WWW/InterPro.py [code]
python-biopython-1.43/Bio/WWW/NCBI.py [code]
python-biopython-1.43/Bio/WWW/SCOP.py [code]
python-biopython-1.43/BioSQL/__init__.py [code]
python-biopython-1.43/BioSQL/BioSeq.py [code]
python-biopython-1.43/BioSQL/BioSeqDatabase.py [code]
python-biopython-1.43/BioSQL/DBUtils.py [code]
python-biopython-1.43/BioSQL/Loader.py [code]
python-biopython-1.43/Doc/cookbook/biopython_test/test_MyModule.py [code]
python-biopython-1.43/Doc/cookbook/genbank_to_fasta/gb_to_fasta-specialized.py [code]
python-biopython-1.43/Doc/cookbook/genbank_to_fasta/gb_to_fasta.py [code]
python-biopython-1.43/Doc/examples/clustal_run.py [code]
python-biopython-1.43/Doc/examples/fasta_dictionary.py [code]
python-biopython-1.43/Doc/examples/fasta_iterator.py [code]
python-biopython-1.43/Doc/examples/getgene.py [code]
python-biopython-1.43/Doc/examples/local_blast.py [code]
python-biopython-1.43/Doc/examples/make_subsmat.py [code]
python-biopython-1.43/Doc/examples/pubmed_search.py [code]
python-biopython-1.43/Doc/examples/query_entrez.py [code]
python-biopython-1.43/Doc/examples/swissprot.py [code]
python-biopython-1.43/Doc/examples/www_blast.py [code]
python-biopython-1.43/Doc/examples/nmr/simplepredict.py [code]
python-biopython-1.43/Martel/__init__.py [code]
python-biopython-1.43/Martel/convert_re.py [code]
python-biopython-1.43/Martel/Dispatch.py [code]
python-biopython-1.43/Martel/Expression.py [code]
python-biopython-1.43/Martel/Generate.py [code]
python-biopython-1.43/Martel/Iterator.py [code]
python-biopython-1.43/Martel/IterParser.py [code]
python-biopython-1.43/Martel/LAX.py [code]
python-biopython-1.43/Martel/msre_constants.py [code]
python-biopython-1.43/Martel/msre_parse.py [code]
python-biopython-1.43/Martel/optimize.py [code]
python-biopython-1.43/Martel/Parser.py [code]
python-biopython-1.43/Martel/RecordReader.py [code]
python-biopython-1.43/Martel/setup.py [code]
python-biopython-1.43/Martel/Time.py [code]
python-biopython-1.43/Martel/formats/__init__.py [code]
python-biopython-1.43/Martel/test/__init__.py [code]
python-biopython-1.43/Martel/test/run_tests.py [code]
python-biopython-1.43/Martel/test/support.py [code]
python-biopython-1.43/Martel/test/test_attrs.py [code]
python-biopython-1.43/Martel/test/test_convert_re.py [code]
python-biopython-1.43/Martel/test/test_delimiter.py [code]
python-biopython-1.43/Martel/test/test_Expression.py [code]
python-biopython-1.43/Martel/test/test_Generate.py [code]
python-biopython-1.43/Martel/test/test_Iterator.py [code]
python-biopython-1.43/Martel/test/test_IterParser.py [code]
python-biopython-1.43/Martel/test/test_LAX.py [code]
python-biopython-1.43/Martel/test/test_macros.py [code]
python-biopython-1.43/Martel/test/test_optimize.py [code]
python-biopython-1.43/Martel/test/test_Parser.py [code]
python-biopython-1.43/Martel/test/test_ParseRecords.py [code]
python-biopython-1.43/Martel/test/test_RecordReader.py [code]
python-biopython-1.43/Martel/test/test_RecordReader2.py [code]
python-biopython-1.43/Martel/test/test_swissprot38.py [code]
python-biopython-1.43/Martel/test/test_Time.py [code]
python-biopython-1.43/Martel/test/testformats/__init__.py [code]
python-biopython-1.43/Martel/test/testformats/delimiter.py [code]
python-biopython-1.43/Martel/test/testformats/swissprot38.py [code]
python-biopython-1.43/Scripts/query_pubmed.py [code]
python-biopython-1.43/Scripts/scop_pdb.py [code]
python-biopython-1.43/Scripts/debug/debug_blast_parser.py [code]
python-biopython-1.43/Scripts/debug/test_db_registry.py [code]
python-biopython-1.43/Scripts/GenBank/check_output.py [code]
python-biopython-1.43/Scripts/GenBank/check_output_simple.py [code]
python-biopython-1.43/Scripts/GenBank/find_parser_problems.py [code]
python-biopython-1.43/Scripts/Index/indexing_ex.py [code]
python-biopython-1.43/Scripts/Performance/biocorba_performance_client.py [code]
python-biopython-1.43/Scripts/Performance/biocorba_sql_server.py [code]
python-biopython-1.43/Scripts/Performance/biosql_performanace_load.py [code]
python-biopython-1.43/Scripts/Performance/biosql_performance_read.py [code]
python-biopython-1.43/Scripts/Registry/biocorba_db_ex.py [code]
python-biopython-1.43/Scripts/Registry/biosql_db_ex.py [code]
python-biopython-1.43/Scripts/Registry/indexed_db_ex.py [code]
python-biopython-1.43/Scripts/Registry/register_db_ex.py [code]
python-biopython-1.43/Scripts/Registry/use_cgi_db.py [code]
python-biopython-1.43/Scripts/Restriction/ranacompiler.py [code]
python-biopython-1.43/Scripts/Restriction/rebase_update.py [code]
python-biopython-1.43/Scripts/SeqGui/SeqGui.py [code]
python-biopython-1.43/Scripts/xbbtools/nextorf.py [code]
python-biopython-1.43/Scripts/xbbtools/xbb_blast.py [code]
python-biopython-1.43/Scripts/xbbtools/xbb_blastbg.py [code]
python-biopython-1.43/Scripts/xbbtools/xbb_help.py [code]
python-biopython-1.43/Scripts/xbbtools/xbb_io.py [code]
python-biopython-1.43/Scripts/xbbtools/xbb_search.py [code]
python-biopython-1.43/Scripts/xbbtools/xbb_sequence.py [code]
python-biopython-1.43/Scripts/xbbtools/xbb_translations.py [code]
python-biopython-1.43/Scripts/xbbtools/xbb_utils.py [code]
python-biopython-1.43/Scripts/xbbtools/xbb_widget.py [code]
python-biopython-1.43/Scripts/xbbtools/xbbtools.py [code]
python-biopython-1.43/Tests/martel_support.py [code]
python-biopython-1.43/Tests/requires_internet.py [code]
python-biopython-1.43/Tests/requires_wise.py [code]
python-biopython-1.43/Tests/run_tests.py [code]
python-biopython-1.43/Tests/test_Ace.py [code]
python-biopython-1.43/Tests/test_ais.py [code]
python-biopython-1.43/Tests/test_align.py [code]
python-biopython-1.43/Tests/test_BioSQL.py [code]
python-biopython-1.43/Tests/test_CAPS.py [code]
python-biopython-1.43/Tests/test_cdd.py [code]
python-biopython-1.43/Tests/test_Cluster.py [code]
python-biopython-1.43/Tests/test_CodonUsage.py [code]
python-biopython-1.43/Tests/test_Compass.py [code]
python-biopython-1.43/Tests/test_copen.py [code]
python-biopython-1.43/Tests/test_Crystal.py [code]
python-biopython-1.43/Tests/test_DocSQL.py [code]
python-biopython-1.43/Tests/test_ecell.py [code]
python-biopython-1.43/Tests/test_EmbossPrimer.py [code]
python-biopython-1.43/Tests/test_Enzyme.py [code]
python-biopython-1.43/Tests/test_EUtils.py [code]
python-biopython-1.43/Tests/test_Fasta.py [code]
python-biopython-1.43/Tests/test_Fasta2.py [code]
python-biopython-1.43/Tests/test_File.py [code]
python-biopython-1.43/Tests/test_format_registry.py [code]
python-biopython-1.43/Tests/test_FSSP.py [code]
python-biopython-1.43/Tests/test_GACrossover.py [code]
python-biopython-1.43/Tests/test_GAMutation.py [code]
python-biopython-1.43/Tests/test_GAOrganism.py [code]
python-biopython-1.43/Tests/test_GAQueens.py [code]
python-biopython-1.43/Tests/test_GARepair.py [code]
python-biopython-1.43/Tests/test_GASelection.py [code]
python-biopython-1.43/Tests/test_GenBank.py [code]
python-biopython-1.43/Tests/test_GenBankFormat.py [code]
python-biopython-1.43/Tests/test_geo.py [code]
python-biopython-1.43/Tests/test_GFF.py [code]
python-biopython-1.43/Tests/test_gobase.py [code]
python-biopython-1.43/Tests/test_GraphicsChromosome.py [code]
python-biopython-1.43/Tests/test_GraphicsDistribution.py [code]
python-biopython-1.43/Tests/test_GraphicsGeneral.py [code]
python-biopython-1.43/Tests/test_HMMCasino.py [code]
python-biopython-1.43/Tests/test_HMMGeneral.py [code]
python-biopython-1.43/Tests/test_HotRand.py [code]
python-biopython-1.43/Tests/test_intelligenetics.py [code]
python-biopython-1.43/Tests/test_interpro.py [code]
python-biopython-1.43/Tests/test_IsoelectricPoint.py [code]
python-biopython-1.43/Tests/test_KDTree.py [code]
python-biopython-1.43/Tests/test_KEGG.py [code]
python-biopython-1.43/Tests/test_KeyWList.py [code]
python-biopython-1.43/Tests/test_Location.py [code]
python-biopython-1.43/Tests/test_LocationParser.py [code]
python-biopython-1.43/Tests/test_locus_http.py [code]
python-biopython-1.43/Tests/test_locuslink.py [code]
python-biopython-1.43/Tests/test_MarkovModel.py [code]
python-biopython-1.43/Tests/test_MEME.py [code]
python-biopython-1.43/Tests/test_metatool.py [code]
python-biopython-1.43/Tests/test_nbrf.py [code]
python-biopython-1.43/Tests/test_NCBIStandalone.py [code]
python-biopython-1.43/Tests/test_NCBIWWW.py [code]
python-biopython-1.43/Tests/test_NCBIXML.py [code]
python-biopython-1.43/Tests/test_ndb.py [code]
python-biopython-1.43/Tests/test_Nexus.py [code]
python-biopython-1.43/Tests/test_NNExclusiveOr.py [code]
python-biopython-1.43/Tests/test_NNGene.py [code]
python-biopython-1.43/Tests/test_NNGeneral.py [code]
python-biopython-1.43/Tests/test_pairwise2.py [code]
python-biopython-1.43/Tests/test_ParserSupport.py [code]
python-biopython-1.43/Tests/test_Pathway.py [code]
python-biopython-1.43/Tests/test_PDB.py [code]
python-biopython-1.43/Tests/test_Phd.py [code]
python-biopython-1.43/Tests/test_prodoc.py [code]
python-biopython-1.43/Tests/test_property_manager.py [code]
python-biopython-1.43/Tests/test_prosite.py [code]
python-biopython-1.43/Tests/test_prosite2.py [code]
python-biopython-1.43/Tests/test_ProtParam.py [code]
python-biopython-1.43/Tests/test_psw.py [code]
python-biopython-1.43/Tests/test_rebase.py [code]
python-biopython-1.43/Tests/test_Registry.py [code]
python-biopython-1.43/Tests/test_Restriction.py [code]
python-biopython-1.43/Tests/test_saf.py [code]
python-biopython-1.43/Tests/test_SCOP_Astral.py [code]
python-biopython-1.43/Tests/test_SCOP_Cla.py [code]
python-biopython-1.43/Tests/test_SCOP_Des.py [code]
python-biopython-1.43/Tests/test_SCOP_Dom.py [code]
python-biopython-1.43/Tests/test_SCOP_Hie.py [code]
python-biopython-1.43/Tests/test_SCOP_Raf.py [code]
python-biopython-1.43/Tests/test_SCOP_Residues.py [code]
python-biopython-1.43/Tests/test_SCOP_Scop.py [code]
python-biopython-1.43/Tests/test_seq.py [code]
python-biopython-1.43/Tests/test_SeqIO.py [code]
python-biopython-1.43/Tests/test_SProt.py [code]
python-biopython-1.43/Tests/test_SubsMat.py [code]
python-biopython-1.43/Tests/test_SVDSuperimposer.py [code]
python-biopython-1.43/Tests/test_translate.py [code]
python-biopython-1.43/Tests/test_trie.py [code]
python-biopython-1.43/Tests/test_triefind.py [code]
python-biopython-1.43/Tests/test_Wise.py [code]
python-biopython-1.43/Tests/unittestgui.py [code]

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