Logo Search packages:      
Sourcecode: python-biopython version File versions  Download package

def Bio::AlignIO::FastaIO::FastaM10Iterator::_skip_file_header (   self,
  line 
) [private]
Helper function for the main parsing code.

Skips over the file header region.
# /home/xxx/Downloads/FASTA/fasta-35.3.6/fasta35 -Q -H -E 1 -m 10 -X "-5 -5" NC_002127.faa NC_009649.faa
FASTA searches a protein or DNA sequence data bank
 version 35.03 Feb. 18, 2008
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: NC_002127.faa

Definition at line 289 of file FastaIO.py.

                                      :
        """Helper function for the main parsing code.

        Skips over the file header region.
        """
        #e.g. This region:
        """
        # /home/xxx/Downloads/FASTA/fasta-35.3.6/fasta35 -Q -H -E 1 -m 10 -X "-5 -5" NC_002127.faa NC_009649.faa
        FASTA searches a protein or DNA sequence data bank
         version 35.03 Feb. 18, 2008
        Please cite:
         W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

        Query: NC_002127.faa
        """
        #Note that there is no point recording the command line here
        #from the # line, as it is included again in each alignment
        #under the "pg_argv" tag.  Likewise for the program version.
        while ">>>" not in line :
            line = self.handle.readline()
        return line


Generated by  Doxygen 1.6.0   Back to index