Logo Search packages:      
Sourcecode: python-biopython version File versions  Download package


# Copyright 2003 by Bartek Wilczynski.  All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license.  Please see the LICENSE file that should have been included
# as part of this package.


This module provides code to work with the standalone version of CompareAce, 
for motif comparison

CompareACE homepage:


CompareAce - runs the AlignACE standalone prgram and returns the ApplicationResult object

import os
import re

from Bio import File
from Applications import CompareAceCommandline

import Scanner
import Parser

def CompareAce( cmd="CompareACE", **keywds):
    """Runs CompareACE and returns data.

    motif1, motif2 == files containing AlignACE motifs

    if not os.path.exists(cmd):
        raise IOError("Executable does not exist at %s" % cmd)
    CompareCmd = CompareAceCommandline(cmd)

    for (par,val) in keywds.iteritems():

    return CompareCmd.run()

Generated by  Doxygen 1.6.0   Back to index