Logo Search packages:      
Sourcecode: python-biopython version File versions  Download package

Public Member Functions

Bio::PDB::DSSP::DSSP Class Reference

Inheritance diagram for Bio::PDB::DSSP::DSSP:
Inheritance graph
Collaboration diagram for Bio::PDB::DSSP::DSSP:
Collaboration graph

List of all members.

Public Member Functions

def __init__

Detailed Description

Run DSSP on a pdb file, and provide a handle to the 
DSSP secondary structure and accessibility.

Note that DSSP can only handle one model.

    >>> p=PDBParser()
    >>> structure=parser.get_structure("1fat.pdb")
    >>> model=structure[0]
    >>> dssp=DSSP(model, "1fat.pdb")
    >>> # print dssp data for a residue
    >>> secondary_structure, accessibility=dssp[(chain_id, res_id)]

Definition at line 139 of file DSSP.py.

The documentation for this class was generated from the following file:

Generated by  Doxygen 1.6.0   Back to index