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test_KDTree.py
# This code is part of the Biopython distribution and governed by its
# license.  Please see the LICENSE file that should have been included
# as part of this package.

try:
    import numpy
except ImportError:
    from Bio import MissingExternalDependencyError
    raise MissingExternalDependencyError(\
        "Install NumPy if you want to use Bio.KDTree.")

try:
    from Bio.KDTree import _CKDTree
except ImportError:
    from Bio import MissingExternalDependencyError
    raise MissingExternalDependencyError(\
        "C module in Bio.KDTree not compiled")

from Bio.KDTree.KDTree import _neighbor_test, _test

nr_points=5000
dim=3
bucket_size=5
radius=0.01

for i in range(0, 10):
    _neighbor_test(nr_points, dim, bucket_size, radius)
    _test(nr_points, dim, bucket_size, radius)

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